TeaCoN
A database of gene co-expression network for tea plant (
Camellia sinensis
)
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TF Family
Annotated gene model
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Co-expression
BLAST
GO Enrichment
KEGG Enrichment
Expression Profile Heatmap
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Enter gene sequence(s) below in
FASTA
format:
[ Click (
nucleotide
or
peptide
) to Insert Example Input ]
Or upload a
FASTA
file:
Program:
blastn
blastp
blastx
blastn - Nucleotide vs. Nucleotide
+
BLASTN Options
General Parameters
Max target sequences
10
50
100
250
500
Expect threshold
10e-6
10e-5
0.0001
0.001
0.01
0.1
1
10
Word size
7
11
15
Scoring Parameters
Match/Mismatch Scores
1,-2
1,-3
1,-4
2,-3
4,-5
1,-1
Gap Costs
Existence: 4 Extension: 4
Existence: 2 Extension: 4
Existence: 0 Extension: 4
Existence: 3 Extension: 3
Existence: 6 Extension: 2
Existence: 5 Extension: 2
Existence: 4 Extension: 2
Existence: 2 Extension: 2
Strand
both
plus
minus
Filters and Masking
Low complexity regions
Mask for lookup table only
General Parameters
Max target sequences
10
50
100
250
500
Expect threshold
10e-6
10e-5
0.0001
0.001
0.01
0.1
1
10
Word size
2
3
6
Scoring Parameters
Matrix
PAM30
PAM70
PAM250
BLOSUM90
BLOSUM80
BLOSUM62
BLOSUM50
BLOSUM45
Threshold
Gap Costs
Existence: 11 Extension: 2
Existence: 10 Extension: 2
Existence: 9 Extension: 2
Existence: 8 Extension: 2
Existence: 7 Extension: 2
Existence: 6 Extension: 2
Existence: 13 Extension: 1
Existence: 12 Extension: 1
Existence: 11 Extension: 1
Existence: 10 Extension: 1
Existence: 9 Extension: 1
Filters and Masking
Low complexity regions
Mask for lookup table only
General Parameters
Max target sequences
10
50
100
250
500
Expect threshold
10e-6
10e-5
0.0001
0.001
0.01
0.1
1
10
Word size
2
3
6
Scoring Parameters
Matrix
PAM30
PAM70
PAM250
BLOSUM90
BLOSUM80
BLOSUM62
BLOSUM50
BLOSUM45
Threshold
Strand
both
plus
minus
Gap Costs
Existence: 11 Extension: 2
Existence: 10 Extension: 2
Existence: 9 Extension: 2
Existence: 8 Extension: 2
Existence: 7 Extension: 2
Existence: 6 Extension: 2
Existence: 13 Extension: 1
Existence: 12 Extension: 1
Existence: 11 Extension: 1
Existence: 10 Extension: 1
Existence: 9 Extension: 1
Filters and Masking
Low complexity regions
Mask for lookup table only